Class RGBColorParticleAnalyzer_

java.lang.Object
  org.shapelogic.imageutil.BaseImageOperation
      org.shapelogic.imageprocessing.BaseParticleCounter
          org.shapelogic.imageprocessing.ColorParticleAnalyzer
              org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ
                  org.shapelogic.imageprocessing.RGBColorParticleAnalyzerIJ
                      RGBColorParticleAnalyzer_

All Implemented Interfaces:

ij.plugin.filter.ExtendedPlugInFilter, ij.plugin.filter.PlugInFilter, java.lang.Runnable, RecursiveContext, IParticleCounter, ImageOperation

public class RGBColorParticleAnalyzer_
extends RGBColorParticleAnalyzerIJ

Particle analyzer where you set the RGB color for either foreground or background.
Works with rectangular ROIs.

All ImageJ functionality are put in superclass ColorParticleAnalyzerIJ in order to unit test it. Classes defined in the default package cannot be referenced from classes existing outside default package.

Author:

Sami Badawi

Field Summary

Fields inherited from class org.shapelogic.imageprocessing.RGBColorParticleAnalyzerIJ

_backgroundStatic, _bStatic, _countOnlyStatic, _displayInternalInfoStatic, _gStatic, _rStatic, _toMaskStatic, _useNeuralNetworkStatic

Fields inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ

_gd, _iterationsStatic, _maxDistanceStatic, _maxPixelsInAreaStatic, _minPixelsInAreaStatic, _neuralNetworkFileStatic, _rt

Fields inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzer

_areaStream, _aspectRatioStream, _curveArchCountStream, _edgeTracer, _grayValueStream, _hardCornerCountStream, _inflectionPointCountStream, _neuralNetworkFile, _particleStream, _perimeterStream, _polygonStream, _roundishStream, _tableBuilder, _tableDefinition, _useNeuralNetwork, _xMaxStream, _xMinStream, _yMaxStream, _yMinStream, loadLetterStreams, loadParticleStreams, loadPolygonStreams

Fields inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

_backgroundArea, _backgroundColor, _backgroundCount, _boundingBoxArea, _categorizer, _colorHypothesis, _colorHypothesisFinder, _context, _countOnly, _displayInternalInfo, _displayTable, _inputColor, _iterations, _maxDistance, _maxPixelsInArea, _minPixelsInArea, _modifying, _paintBackground, _paintForground, _parentContext, _particleCount, _particleImage, _particlesFiltered, _particlesOrig, _referenceColor, _saveArea, _segmentation, _toMask, _useReferenceAsBackground, ITERATIONS_DEFAULTS, MAX_DISTANCE_DEFAULTS, MAX_PIXELS_IN_AREA_DEFAULTS, MIN_PIXELS_IN_AREA_DEFAULTS

Fields inherited from class org.shapelogic.imageutil.BaseImageOperation

_arg, _guiWrapper, _image, _keyValueParser, _setupReturnValue

Fields inherited from interface ij.plugin.filter.ExtendedPlugInFilter

KEEP_PREVIEW

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

RGBColorParticleAnalyzer_()

Method Summary

Methods inherited from class org.shapelogic.imageprocessing.RGBColorParticleAnalyzerIJ

showDialog

Methods inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ

displayInternalInfo, displayResultsTable, populateResultsTableRow, run, setNPasses, setup, setupTableBuilder

Methods inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzer

categorizeStreams, customStreamDefinitions, defaultColumnDefinitions, defaultStreamDefinitions, defineNeuralNetwork, defineRules, getInternalInfo, init, makeBBoxStreams, populateResultsTable

Methods inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

findBackground, findColorHypothesis, getColorHypothesisFinder, getContext, getImageArea, getInputColor, getIterations, getMaxDistance, getMinPixelsInArea, getParentContext, getParticleCount, getParticleFiltered, getSegmentation, getStatus, globalFilter, isParticleImage, isUseReferenceAsBackground, populateResultsTableRowCustom, run, segment, setColorHypothesisFinder, setDisplayTable, setInputColor, setIterations, setMaxDistance, setMinPixelsInArea, setToMask, setUseReferenceAsBackground, showResultDialog

Methods inherited from class org.shapelogic.imageutil.BaseImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.shapelogic.imageutil.ImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Constructor Detail

RGBColorParticleAnalyzer_

public RGBColorParticleAnalyzer_()