org.shapelogic.imageprocessing
Class ColorParticleAnalyzer

java.lang.Object
  org.shapelogic.imageutil.BaseImageOperation
      org.shapelogic.imageprocessing.BaseParticleCounter
          org.shapelogic.imageprocessing.ColorParticleAnalyzer

All Implemented Interfaces:

java.lang.Runnable, RecursiveContext, IParticleCounter, ImageOperation

Direct Known Subclasses:

ColorParticleAnalyzerIJ

public class ColorParticleAnalyzer
extends BaseParticleCounter

Analyzes a particle image in gray or RGB and group the particles according to shape rules.
Find a place in the base class where there is a hook for this extended functionality.
Some of the methods can be moved to ColorParticleAnalyzer to remove dependency of ImageJ.

Author:

Sami Badawi

Field Summary

protected NumberedStream<java.lang.Double>	_aspectRatioStream
protected NumberedStream<java.lang.Integer>	_curveArchCountStream
protected IEdgeTracer	_edgeTracer
protected NumberedStream<java.lang.Integer>	_grayValueStream
protected NumberedStream<java.lang.Integer>	_hardCornerCountStream
protected NumberedStream<java.lang.Integer>	_inflectionPointCountStream
protected WrappedListStream<IColorAndVariance>	_particleStream
protected ListStream<Polygon>	_polygonStream
protected ListCalcStream1<IColorAndVariance,java.lang.Boolean>	_roundishStream
protected LoadLetterStreams	loadLetterStreams
protected LoadParticleStreams	loadParticleStreams
protected LoadPolygonStreams	loadPolygonStreams

Fields inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

_backgroundArea, _backgroundColor, _backgroundCount, _boundingBoxArea, _categorizer, _colorHypothesis, _colorHypothesisFinder, _context, _countOnly, _displayInternalInfo, _displayTable, _inputColor, _iterations, _maxDistance, _maxPixelsInArea, _minPixelsInArea, _modifying, _paintBackground, _paintForground, _parentContext, _particleCount, _particleImage, _particlesFiltered, _particlesOrig, _referenceColor, _saveArea, _segmentation, _toMask, _useReferenceAsBackground, ITERATIONS_DEFAULTS, MAX_DISTANCE_DEFAULTS, MAX_PIXELS_IN_AREA_DEFAULTS, MIN_PIXELS_IN_AREA_DEFAULTS

Fields inherited from class org.shapelogic.imageutil.BaseImageOperation

_arg, _guiWrapper, _image, _keyValueParser, _setupReturnValue

Constructor Summary

ColorParticleAnalyzer()

Method Summary

protected void	categorizeStreams() Analyzes particles and group them. Not sure if I should use named streams or try to avoid it to make it more thread safe.
protected void	customStreamDefinitions() Define extra streams.
protected void	defaultStreamDefinitions() Define extra streams and also extra columns.
java.lang.StringBuffer	getInternalInfo()
void	init() Setup all the needed factory methods based on what type the image has.
protected void	populateResultsTable() Populate the table with the streams.

Methods inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

customColumnDefinitions, defaultColumnDefinitions, displayInternalInfo, displayResultsTable, findBackground, findColorHypothesis, getColorHypothesisFinder, getContext, getImageArea, getInputColor, getIterations, getMaxDistance, getMinPixelsInArea, getParentContext, getParticleCount, getParticleFiltered, getSegmentation, getStatus, globalFilter, isParticleImage, isUseReferenceAsBackground, populateResultsTableRow, populateResultsTableRowCustom, run, segment, setColorHypothesisFinder, setDisplayTable, setInputColor, setIterations, setMaxDistance, setMinPixelsInArea, setToMask, setUseReferenceAsBackground, showResultDialog

Methods inherited from class org.shapelogic.imageutil.BaseImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.shapelogic.imageutil.ImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Field Detail

_particleStream

protected WrappedListStream<IColorAndVariance> _particleStream

_polygonStream

protected ListStream<Polygon> _polygonStream

_edgeTracer

protected IEdgeTracer _edgeTracer

_aspectRatioStream

protected NumberedStream<java.lang.Double> _aspectRatioStream

_grayValueStream

protected NumberedStream<java.lang.Integer> _grayValueStream

_hardCornerCountStream

protected NumberedStream<java.lang.Integer> _hardCornerCountStream

_roundishStream

protected ListCalcStream1<IColorAndVariance,java.lang.Boolean> _roundishStream

_inflectionPointCountStream

protected NumberedStream<java.lang.Integer> _inflectionPointCountStream

_curveArchCountStream

protected NumberedStream<java.lang.Integer> _curveArchCountStream

loadPolygonStreams

protected LoadPolygonStreams loadPolygonStreams

loadParticleStreams

protected LoadParticleStreams loadParticleStreams

loadLetterStreams

protected LoadLetterStreams loadLetterStreams

Constructor Detail

ColorParticleAnalyzer

public ColorParticleAnalyzer()

Method Detail

init

public void init()
          throws java.lang.Exception

Description copied from class: BaseParticleCounter

Setup all the needed factory methods based on what type the image has.

Overrides:

init in class BaseParticleCounter

Throws:

java.lang.Exception

defaultStreamDefinitions

protected void defaultStreamDefinitions()

Description copied from class: BaseParticleCounter

Define extra streams and also extra columns.

Overrides:

defaultStreamDefinitions in class BaseParticleCounter

categorizeStreams

protected void categorizeStreams()

Analyzes particles and group them.
Not sure if I should use named streams or try to avoid it to make it more thread safe.

Overrides:

categorizeStreams in class BaseParticleCounter

customStreamDefinitions

protected void customStreamDefinitions()

Define extra streams.

Overrides:

customStreamDefinitions in class BaseParticleCounter

populateResultsTable

protected void populateResultsTable()

Description copied from class: BaseParticleCounter

Populate the table with the streams.

Overrides:

populateResultsTable in class BaseParticleCounter

getInternalInfo

public java.lang.StringBuffer getInternalInfo()

Overrides:

getInternalInfo in class BaseParticleCounter