org.shapelogic.imageprocessing
Class BaseParticleCounter

java.lang.Object
  org.shapelogic.imageutil.BaseImageOperation
      org.shapelogic.imageprocessing.BaseParticleCounter

All Implemented Interfaces:

java.lang.Runnable, IParticleCounter, ImageOperation

Direct Known Subclasses:

ParticleCounter

public class BaseParticleCounter
extends BaseImageOperation
implements IParticleCounter

ParticleCounter count number of particles in a particle image.
This is really just a slightly modified segmenter.

Author:

Sami Badawi

Field Summary

protected int	_backgroundArea
protected int	_backgroundCount
protected double	_boundingBoxArea
protected ColorHypothesis	_colorHypothesis
protected IColorHypothesisFinder	_colorHypothesisFinder
protected int	_iterations
protected double	_maxDistance
protected int	_minPixelsInArea
protected boolean	_modifying Modifying colors
protected java.lang.Integer	_particleCount
protected java.lang.Boolean	_particleImage
protected boolean	_saveArea
protected SBSegmentation	_segmentation

Fields inherited from class org.shapelogic.imageutil.BaseImageOperation

_arg, _guiWrapper, _image, _setupReturnValue

Constructor Summary

BaseParticleCounter()

Method Summary

protected boolean	countBackground()
IColorHypothesisFinder	getColorHypothesisFinder()
double	getImageArea()
int	getIterations()
double	getMaxDistance()
int	getMinPixelsInArea()
int	getParticleCount()
SBSegmentation	getSegmentation()
java.lang.String	getStatus()
protected void	init() Setup all the needed factory methods based on what type the image has.
boolean	isParticleImage()
void	run()
void	setColorHypothesisFinder(IColorHypothesisFinder colorHypothesisFinder)
void	setIterations(int iterations)
void	setMaxDistance(double maxDistance)
void	setMinPixelsInArea(int minPixelsInArea)

Methods inherited from class org.shapelogic.imageutil.BaseImageOperation

getGuiWrapper, getImage, getSetupReturnValue, isImageValid, setGuiWrapper, setSetupReturnValue, setup, showAbout, showMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.shapelogic.imageutil.ImageOperation

getGuiWrapper, getImage, getSetupReturnValue, isImageValid, setGuiWrapper, setSetupReturnValue, setup, showAbout, showMessage

Field Detail

_particleImage

protected java.lang.Boolean _particleImage

_modifying

protected boolean _modifying

Modifying colors

_segmentation

protected SBSegmentation _segmentation

_saveArea

protected boolean _saveArea

_colorHypothesisFinder

protected IColorHypothesisFinder _colorHypothesisFinder

_colorHypothesis

protected ColorHypothesis _colorHypothesis

_backgroundArea

protected int _backgroundArea

_backgroundCount

protected int _backgroundCount

_particleCount

protected java.lang.Integer _particleCount

_boundingBoxArea

protected double _boundingBoxArea

_iterations

protected int _iterations

_maxDistance

protected double _maxDistance

_minPixelsInArea

protected int _minPixelsInArea

Constructor Detail

BaseParticleCounter

public BaseParticleCounter()

Method Detail

run

public void run()

Specified by:

run in interface java.lang.Runnable

init

protected void init()
             throws java.lang.Exception

Setup all the needed factory methods based on what type the image has.

Throws:

java.lang.Exception

getStatus

public java.lang.String getStatus()

Specified by:

getStatus in interface IParticleCounter

getSegmentation

public SBSegmentation getSegmentation()

Specified by:

getSegmentation in interface IParticleCounter

isParticleImage

public boolean isParticleImage()

Specified by:

isParticleImage in interface IParticleCounter

countBackground

protected boolean countBackground()

getImageArea

public double getImageArea()

getParticleCount

public int getParticleCount()

Specified by:

getParticleCount in interface IParticleCounter

getColorHypothesisFinder

public IColorHypothesisFinder getColorHypothesisFinder()

Specified by:

getColorHypothesisFinder in interface IParticleCounter

setColorHypothesisFinder

public void setColorHypothesisFinder(IColorHypothesisFinder colorHypothesisFinder)

Specified by:

setColorHypothesisFinder in interface IParticleCounter

getMaxDistance

public double getMaxDistance()

Specified by:

getMaxDistance in interface IParticleCounter

setMaxDistance

public void setMaxDistance(double maxDistance)

Specified by:

setMaxDistance in interface IParticleCounter

getMinPixelsInArea

public int getMinPixelsInArea()

Specified by:

getMinPixelsInArea in interface IParticleCounter

setMinPixelsInArea

public void setMinPixelsInArea(int minPixelsInArea)

Specified by:

setMinPixelsInArea in interface IParticleCounter

getIterations

public int getIterations()

Specified by:

getIterations in interface IParticleCounter

setIterations

public void setIterations(int iterations)

Specified by:

setIterations in interface IParticleCounter