org.shapelogic.imageprocessing
Class StreamVectorizerIJ

java.lang.Object
  org.shapelogic.imageutil.BaseImageOperation
      org.shapelogic.imageprocessing.BaseVectorizer
          org.shapelogic.imageprocessing.BaseMaxDistanceVectorizer
              org.shapelogic.imageprocessing.StreamVectorizer
                  org.shapelogic.imageprocessing.StreamVectorizerIJ

All Implemented Interfaces:

ij.plugin.filter.ExtendedPlugInFilter, ij.plugin.filter.PlugInFilter, java.lang.Runnable, java.util.Iterator<Polygon>, RecursiveContext, IPixelTypeFinder, LazyPlugInFilter<Polygon>, PixelJumperByte, ImageOperation

Direct Known Subclasses:

DigitStreamVectorizer_, StreamVectorizer_

public class StreamVectorizerIJ
extends StreamVectorizer
implements ij.plugin.filter.ExtendedPlugInFilter

Line vectorizer and categorizer as an ImageJ ExtendedPlugInFilter.

Works with rectangular ROIs

Author:

Sami Badawi

Field Summary

protected static boolean	_displayInputDialogStatic
protected static boolean	_displayInternalInfoStatic
protected static boolean	_displayResultTableStatic
protected ij.gui.GenericDialog	_gd
protected static java.lang.String	_neuralNetworkFileStatic
protected static boolean	_noMatchStatic
protected ij.measure.ResultsTable	_rt
protected static boolean	_toMaskStatic
protected static boolean	_useNeuralNetworkStatic

Fields inherited from class org.shapelogic.imageprocessing.StreamVectorizer

_categorizer, _context, _displayAll, _displayResultTable, _neuralNetworkFile, _printListOverwrite, _tableBuilder, _tableDefinition, _useNeuralNetwork, loadLetterStreams

Fields inherited from class org.shapelogic.imageprocessing.BaseMaxDistanceVectorizer

_chainCodeHandler

Fields inherited from class org.shapelogic.imageprocessing.BaseVectorizer

_cleanedupPolygon, _currentDirection, _currentPixelIndex, _currentPoint, _cyclePoints, _displayInternalInfo, _endPointsClusters, _errorMessage, _firstPointInLineIndex, _firstPointInMultiLine, _matchingOH, _maxX, _maxY, _minX, _minY, _nextCount, _numberOfPointsInAllLines, _pixels, _pixelTypeCalculator, _pixelTypeFinder, _rulesArrayForLetterMatching, _stream, _streamName, _unfinishedPoints, _yForUnporcessedPixel, MAX_DISTANCE_BETWEEN_CLUSTER_POINTS, STRAIGHT_LINE_COLOR

Fields inherited from class org.shapelogic.imageutil.BaseImageOperation

_arg, _guiWrapper, _image, _keyValueParser, _setupReturnValue

Fields inherited from interface ij.plugin.filter.ExtendedPlugInFilter

KEEP_PREVIEW

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

StreamVectorizerIJ()

Method Summary

protected void	displayResultsTable()
protected boolean	populateResultsTableRow(int index)
void	run(ij.process.ImageProcessor ip)
void	setNPasses(int passes)
int	setup(java.lang.String arg, ij.ImagePlus imp)
protected void	setupTableBuilder()
int	showDialog(ij.ImagePlus imp, java.lang.String command, ij.plugin.filter.PlugInFilterRunner pfr)

Methods inherited from class org.shapelogic.imageprocessing.StreamVectorizer

categorizeStreams, customStreamDefinitions, defaultColumnDefinitions, defaultStreamDefinitions, defineNeuralNetwork, defineRules, getContext, getParentContext, init, matchLines, matchSetup, populateResultsTable, printTable, readFFNeuralNetworkWeights, run, setNeuralNetworkFile, setUseNeuralNetwork

Methods inherited from class org.shapelogic.imageprocessing.BaseMaxDistanceVectorizer

findMultiLine, findMultiLinePostProcess, findMultiLinePreProcess, findNextLinePoint, handleProblematicPoints, internalFactory, lastPixelOk

Methods inherited from class org.shapelogic.imageprocessing.BaseVectorizer

addToUnfinishedPoints, cleanPolygon, countRegionCrossingsAroundPoint, drawLine, drawLines, findAllLines, findFirstLinePoint, findPointType, getCleanedupPolygon, getCyclePoints, getErrorMessage, getImageProcessor, getMatchingOH, getMaxX, getMaxY, getMinX, getMinY, getPixels, getPoints, getPolygon, getStream, getStreamName, hasNext, isPixelUsed, moveCurrentPointForwards, next, oppesiteDirection, pixelIndexToPoint, pointToPixelIndex, pointToPixelIndex, polygonFactory, remove, setStreamName

Methods inherited from class org.shapelogic.imageutil.BaseImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

_rt

protected ij.measure.ResultsTable _rt

_gd

protected ij.gui.GenericDialog _gd

_noMatchStatic

protected static boolean _noMatchStatic

_toMaskStatic

protected static boolean _toMaskStatic

_displayInternalInfoStatic

protected static boolean _displayInternalInfoStatic

_displayResultTableStatic

protected static boolean _displayResultTableStatic

_displayInputDialogStatic

protected static boolean _displayInputDialogStatic

_useNeuralNetworkStatic

protected static boolean _useNeuralNetworkStatic

_neuralNetworkFileStatic

protected static java.lang.String _neuralNetworkFileStatic

Constructor Detail

StreamVectorizerIJ

public StreamVectorizerIJ()

Method Detail

run

public void run(ij.process.ImageProcessor ip)

Specified by:

run in interface ij.plugin.filter.PlugInFilter

setup

public int setup(java.lang.String arg,
                 ij.ImagePlus imp)

Specified by:

setup in interface ij.plugin.filter.PlugInFilter

displayResultsTable

protected void displayResultsTable()

Overrides:

displayResultsTable in class StreamVectorizer

setNPasses

public void setNPasses(int passes)

Specified by:

setNPasses in interface ij.plugin.filter.ExtendedPlugInFilter

showDialog

public int showDialog(ij.ImagePlus imp,
                      java.lang.String command,
                      ij.plugin.filter.PlugInFilterRunner pfr)

Specified by:

showDialog in interface ij.plugin.filter.ExtendedPlugInFilter

setupTableBuilder

protected void setupTableBuilder()

Overrides:

setupTableBuilder in class StreamVectorizer

populateResultsTableRow

protected boolean populateResultsTableRow(int index)

Overrides:

populateResultsTableRow in class StreamVectorizer