org.shapelogic.imageprocessing
Class RGBColorParticleAnalyzerIJ

java.lang.Object
  org.shapelogic.imageutil.BaseImageOperation
      org.shapelogic.imageprocessing.BaseParticleCounter
          org.shapelogic.imageprocessing.ColorParticleAnalyzer
              org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ
                  org.shapelogic.imageprocessing.RGBColorParticleAnalyzerIJ

All Implemented Interfaces:

ij.plugin.filter.ExtendedPlugInFilter, ij.plugin.filter.PlugInFilter, java.lang.Runnable, RecursiveContext, IParticleCounter, ImageOperation

Direct Known Subclasses:

RGBColorParticleAnalyzer_

public class RGBColorParticleAnalyzerIJ
extends ColorParticleAnalyzerIJ

Particle analyzer where you set the RGB color for either foreground or background.
Works with rectangular ROIs

Author:

Sami Badawi

Field Summary

protected static boolean	_backgroundStatic
protected static int	_bStatic
protected static boolean	_countOnlyStatic
protected static boolean	_displayInternalInfoStatic
protected static int	_gStatic
protected static java.lang.String	_neuralNetworkFileStatic
protected static int	_rStatic
protected static boolean	_toMaskStatic
protected static boolean	_useNeuralNetworkStatic

Fields inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ

_gd, _iterationsStatic, _maxDistanceStatic, _maxPixelsInAreaStatic, _minPixelsInAreaStatic, _rt

Fields inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzer

_areaStream, _aspectRatioStream, _curveArchCountStream, _edgeTracer, _grayValueStream, _hardCornerCountStream, _inflectionPointCountStream, _neuralNetworkFile, _particleStream, _perimeterStream, _polygonStream, _printListOverwrite, _roundishStream, _tableBuilder, _tableDefinition, _useNeuralNetwork, _xMaxStream, _xMinStream, _yMaxStream, _yMinStream, loadLetterStreams, loadParticleStreams, loadPolygonStreams

Fields inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

_backgroundArea, _backgroundColor, _backgroundCount, _boundingBoxArea, _categorizer, _colorHypothesis, _colorHypothesisFinder, _context, _countOnly, _displayInternalInfo, _displayTable, _errorMessage, _inputColor, _iterations, _maxDistance, _maxPixelsInArea, _minPixelsInArea, _modifying, _paintBackground, _paintForground, _parentContext, _particleCount, _particleImage, _particlesFiltered, _particlesOrig, _referenceColor, _saveArea, _segmentation, _toMask, _useReferenceAsBackground, ITERATIONS_DEFAULTS, MAX_DISTANCE_DEFAULTS, MAX_PIXELS_IN_AREA_DEFAULTS, MIN_PIXELS_IN_AREA_DEFAULTS

Fields inherited from class org.shapelogic.imageutil.BaseImageOperation

_arg, _guiWrapper, _image, _keyValueParser, _setupReturnValue

Fields inherited from interface ij.plugin.filter.ExtendedPlugInFilter

KEEP_PREVIEW

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

RGBColorParticleAnalyzerIJ()

Method Summary

int	showDialog(ij.ImagePlus imp, java.lang.String command, ij.plugin.filter.PlugInFilterRunner pfr)

Methods inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ

displayInternalInfo, displayResultsTable, getFilePath, populateResultsTableRow, run, setNPasses, setup, setupTableBuilder

Methods inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzer

categorizeStreams, customStreamDefinitions, defaultColumnDefinitions, defaultStreamDefinitions, defineNeuralNetwork, defineRules, getInternalInfo, getTableBuilderOutputList, init, makeBBoxStreams, populateResultsTable, setNeuralNetworkFile, setUseNeuralNetwork

Methods inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

findBackground, findColorHypothesis, getColorHypothesisFinder, getContext, getErrorMessage, getImageArea, getInputColor, getIterations, getMaxDistance, getMinPixelsInArea, getParentContext, getParticleCount, getParticleFiltered, getSegmentation, getStatus, globalFilter, isParticleImage, isUseReferenceAsBackground, populateResultsTableRowCustom, run, segment, setColorHypothesisFinder, setDisplayTable, setInputColor, setIterations, setMaxDistance, setMinPixelsInArea, setToMask, setUseReferenceAsBackground, showResultDialog

Methods inherited from class org.shapelogic.imageutil.BaseImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.shapelogic.imageutil.ImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Field Detail

_rStatic

protected static int _rStatic

_gStatic

protected static int _gStatic

_bStatic

protected static int _bStatic

_backgroundStatic

protected static boolean _backgroundStatic

_countOnlyStatic

protected static boolean _countOnlyStatic

_toMaskStatic

protected static boolean _toMaskStatic

_displayInternalInfoStatic

protected static boolean _displayInternalInfoStatic

_useNeuralNetworkStatic

protected static boolean _useNeuralNetworkStatic

_neuralNetworkFileStatic

protected static java.lang.String _neuralNetworkFileStatic

Constructor Detail

RGBColorParticleAnalyzerIJ

public RGBColorParticleAnalyzerIJ()

Method Detail

showDialog

public int showDialog(ij.ImagePlus imp,
                      java.lang.String command,
                      ij.plugin.filter.PlugInFilterRunner pfr)

Specified by:

showDialog in interface ij.plugin.filter.ExtendedPlugInFilter

Overrides:

showDialog in class ColorParticleAnalyzerIJ