Class ColorParticleAnalyzer_

java.lang.Object
  org.shapelogic.imageutil.BaseImageOperation
      org.shapelogic.imageprocessing.BaseParticleCounter
          org.shapelogic.imageprocessing.ColorParticleAnalyzer
              org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ
                  ColorParticleAnalyzer_

All Implemented Interfaces:

ij.plugin.filter.ExtendedPlugInFilter, ij.plugin.filter.PlugInFilter, java.lang.Runnable, RecursiveContext, IParticleCounter, ImageOperation

public class ColorParticleAnalyzer_
extends ColorParticleAnalyzerIJ

Automatic particle counter for 24 bit RGB and 8 bit Gray.
Works with rectangular ROIs.

All ImageJ functionality are put in superclass ColorParticleAnalyzerIJ in order to unit test it. Classes defined in the default package cannot be referenced from classes existing outside default package.

Author:

Sami Badawi

Field Summary

Fields inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ

_countOnlyStatic, _displayInternalInfoStatic, _gd, _iterationsStatic, _maxDistanceStatic, _maxPixelsInAreaStatic, _minPixelsInAreaStatic, _neuralNetworkFileStatic, _rt, _toMaskStatic, _useNeuralNetworkStatic

Fields inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzer

_areaStream, _aspectRatioStream, _curveArchCountStream, _edgeTracer, _grayValueStream, _hardCornerCountStream, _inflectionPointCountStream, _neuralNetworkFile, _particleStream, _perimeterStream, _polygonStream, _printListOverwrite, _roundishStream, _tableBuilder, _tableDefinition, _useNeuralNetwork, _xMaxStream, _xMinStream, _yMaxStream, _yMinStream, loadLetterStreams, loadParticleStreams, loadPolygonStreams

Fields inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

_backgroundArea, _backgroundColor, _backgroundCount, _boundingBoxArea, _categorizer, _colorHypothesis, _colorHypothesisFinder, _context, _countOnly, _displayInternalInfo, _displayTable, _errorMessage, _inputColor, _iterations, _maxDistance, _maxPixelsInArea, _minPixelsInArea, _modifying, _paintBackground, _paintForground, _parentContext, _particleCount, _particleImage, _particlesFiltered, _particlesOrig, _referenceColor, _saveArea, _segmentation, _toMask, _useReferenceAsBackground, ITERATIONS_DEFAULTS, MAX_DISTANCE_DEFAULTS, MAX_PIXELS_IN_AREA_DEFAULTS, MIN_PIXELS_IN_AREA_DEFAULTS

Fields inherited from class org.shapelogic.imageutil.BaseImageOperation

_arg, _guiWrapper, _image, _keyValueParser, _setupReturnValue

Fields inherited from interface ij.plugin.filter.ExtendedPlugInFilter

KEEP_PREVIEW

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

ColorParticleAnalyzer_()

Method Summary

Methods inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzerIJ

displayInternalInfo, displayResultsTable, getFilePath, populateResultsTableRow, run, setNPasses, setup, setupTableBuilder, showDialog

Methods inherited from class org.shapelogic.imageprocessing.ColorParticleAnalyzer

categorizeStreams, customStreamDefinitions, defaultColumnDefinitions, defaultStreamDefinitions, defineNeuralNetwork, defineRules, getInternalInfo, getTableBuilderOutputList, init, makeBBoxStreams, populateResultsTable, setNeuralNetworkFile, setUseNeuralNetwork

Methods inherited from class org.shapelogic.imageprocessing.BaseParticleCounter

findBackground, findColorHypothesis, getColorHypothesisFinder, getContext, getErrorMessage, getImageArea, getInputColor, getIterations, getMaxDistance, getMinPixelsInArea, getParentContext, getParticleCount, getParticleFiltered, getSegmentation, getStatus, globalFilter, isParticleImage, isUseReferenceAsBackground, populateResultsTableRowCustom, run, segment, setColorHypothesisFinder, setDisplayTable, setInputColor, setIterations, setMaxDistance, setMinPixelsInArea, setToMask, setUseReferenceAsBackground, showResultDialog

Methods inherited from class org.shapelogic.imageutil.BaseImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.shapelogic.imageutil.ImageOperation

getGuiWrapper, getImage, getKeyValueParser, getSetupReturnValue, isImageValid, setArg, setGuiWrapper, setKeyValueParser, setSetupReturnValue, setup, showAbout, showMessage

Constructor Detail

ColorParticleAnalyzer_

public ColorParticleAnalyzer_()